| .. |
|
adapterremoval
|
new module: AdapterRemoval (#309)
|
2021-03-22 17:16:04 +00:00 |
|
allelecounter
|
Add alleleCounter module (#313)
|
2021-03-23 14:37:53 +01:00 |
|
bandage/image
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
bcftools
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
bedtools
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
bismark
|
bismark: remove underscores from process names (#303)
|
2021-03-22 17:46:11 +01:00 |
|
blast
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
bowtie
|
Add default output dir for modules that create indices, updated (#336)
|
2021-03-23 17:55:01 +00:00 |
|
bowtie2
|
Add default output dir for modules that create indices, updated (#336)
|
2021-03-23 17:55:01 +00:00 |
|
bwa
|
Add default output dir for modules that create indices, updated (#336)
|
2021-03-23 17:55:01 +00:00 |
|
bwamem2
|
Add default output dir for modules that create indices, updated (#336)
|
2021-03-23 17:55:01 +00:00 |
|
bwameth
|
Add default output dir for modules that create indices, updated (#336)
|
2021-03-23 17:55:01 +00:00 |
|
cat/fastq
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
cnvkit
|
cnvkit module (#173)
|
2021-03-22 15:27:30 -07:00 |
|
cutadapt
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
deeptools
|
Remove def from module options definition in main (#270)
|
2021-03-15 12:16:43 +00:00 |
|
dsh
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
fastp
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
fastqc
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
flash
|
Re-organise all test data (#354)
|
2021-03-24 09:53:41 +00:00 |
|
gatk4
|
Add gatk4/baserecalibrator (#327)
|
2021-03-23 18:32:37 +01:00 |
|
gffread
|
Fix nf-core modules lint tests (#275)
|
2021-03-16 17:16:47 +00:00 |
|
gunzip
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
hisat2
|
Add default output dir for modules that create indices, updated (#336)
|
2021-03-23 17:55:01 +00:00 |
|
homer/annotatepeaks
|
Homer (#330)
|
2021-03-23 11:24:54 -07:00 |
|
ivar
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
kallisto/index
|
Add module kallisto/index (#357)
|
2021-03-24 12:25:39 +00:00 |
|
kraken2/run
|
Add kraken2 run module (#266)
|
2021-03-18 13:08:06 +00:00 |
|
lib
|
style(#77): Fix editorconfig errors
|
2020-12-17 17:50:24 -06:00 |
|
macs2/callpeak
|
Remove def from module options definition in main (#270)
|
2021-03-15 12:16:43 +00:00 |
|
methyldackel
|
methyldackel: bump version to 0.5.2 (#305)
|
2021-03-22 17:46:28 +01:00 |
|
minia
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
minimap2/align
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
mosdepth
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
multiqc
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
optitype
|
Add in OptiType (configbuilder, type) module(s) (#301)
|
2021-03-23 16:48:05 +01:00 |
|
pangolin
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
phantompeakqualtools
|
Remove def from module options definition in main (#270)
|
2021-03-15 12:16:43 +00:00 |
|
picard
|
add picard_collectwgsmetrics (#304)
|
2021-03-22 17:05:59 +01:00 |
|
preseq/lcextrap
|
Remove def from module options definition in main (#270)
|
2021-03-15 12:16:43 +00:00 |
|
prodigal
|
Prodigal (#333)
|
2021-03-23 11:03:58 -07:00 |
|
prokka
|
Add process label to prokka (#350)
|
2021-03-24 04:54:52 +00:00 |
|
qualimap
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
quast
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
rsem
|
Add default output dir for modules that create indices, updated (#336)
|
2021-03-23 17:55:01 +00:00 |
|
rseqc
|
Remove def from module options definition in main (#270)
|
2021-03-15 12:16:43 +00:00 |
|
salmon
|
Add default output dir for modules that create indices, updated (#336)
|
2021-03-23 17:55:01 +00:00 |
|
samtools
|
modified the samtools/fastq module (#339)
|
2021-03-23 17:43:52 +00:00 |
|
seacr/callpeak
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
seqkit/split2
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
sequenzautils/gcwiggle
|
PR for sequenzautils/gcwiggle (#345)
|
2021-03-24 05:03:03 +00:00 |
|
seqwish/induce
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
shovill
|
Update shovill module (#337)
|
2021-03-24 04:57:41 +00:00 |
|
sortmerna
|
Remove def from module options definition in main (#270)
|
2021-03-15 12:16:43 +00:00 |
|
spades
|
Add spades module (#277)
|
2021-03-18 13:48:38 +00:00 |
|
star
|
Add default output dir for modules that create indices, updated (#336)
|
2021-03-23 17:55:01 +00:00 |
|
strelka/germline
|
Re-organise all test data (#354)
|
2021-03-24 09:53:41 +00:00 |
|
stringtie
|
Remove def from module options definition in main (#270)
|
2021-03-15 12:16:43 +00:00 |
|
subread/featurecounts
|
Remove def from module options definition in main (#270)
|
2021-03-15 12:16:43 +00:00 |
|
tabix
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
tiddit/sv
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
trimgalore
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
ucsc
|
ucsc_bed12tobigbed (previous pull request had conflicts) (#302)
|
2021-03-24 04:55:49 +00:00 |
|
umitools
|
Remove def from module options definition in main (#270)
|
2021-03-15 12:16:43 +00:00 |
|
unicycler
|
Adding unicycler module (#307)
|
2021-03-22 18:14:24 +01:00 |
|
untar
|
remove params section from meta.yml (#282)
|
2021-03-19 13:16:50 +01:00 |
|
vcftools
|
add vcftools module (#334)
|
2021-03-24 04:54:23 +00:00 |
22eaefe583