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https://github.com/MillironX/nf-core_modules.git
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83a500e6b0
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint * Initial commit for test data config * Rename test data * Include test config * Update indents * Update test for FastQC via config * Remove quotes of bottom-level variables * Use underscores in key names * Get tests working for fastp * Remove whitespace at beginning of file
29 lines
584 B
Text
29 lines
584 B
Text
params {
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outdir = "output/"
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publish_dir_mode = "copy"
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enable_conda = false
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singularity_pull_docker_container = false
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}
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process {
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cpus = 2
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memory = 3.GB
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time = 48.h
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}
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if ("$PROFILE" == "singularity") {
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singularity.enabled = true
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singularity.autoMounts = true
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} else if ("$PROFILE" == "conda") {
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params.enable_conda = true
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} else {
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docker.enabled = true
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docker.runOptions = '-u \$(id -u):\$(id -g)'
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}
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// Load test_data.config containing paths to test data
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includeConfig 'test_data.config'
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manifest {
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nextflowVersion = '!>=20.11.0-edge'
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}
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