mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
ee90e7af77
* Add default output dir for modules that create indices * Change path for index module test output * Fix bowtie2/align tests * Fixing bowtie/align tests * Fix genomegenerate test * Fixing README linting
43 lines
1.8 KiB
YAML
43 lines
1.8 KiB
YAML
- name: bowtie2 align single-end
|
|
command: nextflow run ./tests/software/bowtie2/align -entry test_bowtie2_align_single_end -c tests/config/nextflow.config
|
|
tags:
|
|
- bowtie2
|
|
- bowtie2_align
|
|
- bowtie2_align_single_end
|
|
files:
|
|
- path: ./output/bowtie2/test.bam
|
|
- path: ./output/bowtie2/test.bowtie2.log
|
|
- path: ./output/index/bowtie2/test_genome.3.bt2
|
|
md5sum: 4ed93abba181d8dfab2e303e33114777
|
|
- path: ./output/index/bowtie2/test_genome.2.bt2
|
|
md5sum: 47b153cd1319abc88dda532462651fcf
|
|
- path: ./output/index/bowtie2/test_genome.1.bt2
|
|
md5sum: cbe3d0bbea55bc57c99b4bfa25b5fbdf
|
|
- path: ./output/index/bowtie2/test_genome.4.bt2
|
|
md5sum: c25be5f8b0378abf7a58c8a880b87626
|
|
- path: ./output/index/bowtie2/test_genome.rev.1.bt2
|
|
md5sum: 52be6950579598a990570fbcf5372184
|
|
- path: ./output/index/bowtie2/test_genome.rev.2.bt2
|
|
md5sum: e3b4ef343dea4dd571642010a7d09597
|
|
|
|
- name: bowtie2 align paired-end
|
|
command: nextflow run ./tests/software/bowtie2/align -entry test_bowtie2_align_paired_end -c tests/config/nextflow.config
|
|
tags:
|
|
- bowtie2
|
|
- bowtie2_align
|
|
- bowtie2_align_paired_end
|
|
files:
|
|
- path: ./output/bowtie2/test.bam
|
|
- path: ./output/bowtie2/test.bowtie2.log
|
|
- path: ./output/index/bowtie2/test_genome.3.bt2
|
|
md5sum: 4ed93abba181d8dfab2e303e33114777
|
|
- path: ./output/index/bowtie2/test_genome.2.bt2
|
|
md5sum: 47b153cd1319abc88dda532462651fcf
|
|
- path: ./output/index/bowtie2/test_genome.1.bt2
|
|
md5sum: cbe3d0bbea55bc57c99b4bfa25b5fbdf
|
|
- path: ./output/index/bowtie2/test_genome.4.bt2
|
|
md5sum: c25be5f8b0378abf7a58c8a880b87626
|
|
- path: ./output/index/bowtie2/test_genome.rev.1.bt2
|
|
md5sum: 52be6950579598a990570fbcf5372184
|
|
- path: ./output/index/bowtie2/test_genome.rev.2.bt2
|
|
md5sum: e3b4ef343dea4dd571642010a7d09597
|