mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
41 lines
2 KiB
YAML
41 lines
2 KiB
YAML
- name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark
|
|
command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/markduplicatesspark
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
md5sum: dc1a09ac6371aab7c50d1a554baa06d3
|
|
- path: output/gatk4/versions.yml
|
|
|
|
- name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark_multiple_bams
|
|
command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark_multiple_bams -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/markduplicatesspark
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
md5sum: 898cb0a6616897d8ada90bab53bf0837
|
|
- path: output/gatk4/versions.yml
|
|
|
|
- name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark_multiple_bams_cram_out
|
|
command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark_multiple_bams_cram_out -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/markduplicatesspark
|
|
files:
|
|
- path: output/gatk4/test.cram
|
|
md5sum: 2271016de5e4199736598f39d12d7587
|
|
- path: output/gatk4/versions.yml
|
|
|
|
- name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark_multiple_bams_metrics
|
|
command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark_multiple_bams_metrics -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/markduplicatesspark
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
md5sum: 898cb0a6616897d8ada90bab53bf0837
|
|
- path: output/gatk4/test.metrics
|
|
contains: ["## METRICS CLASS", "org.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics"]
|
|
- path: output/gatk4/versions.yml
|