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826a5603db
* Stage fastq for concat in subfolders in task workdir * Update main.nf * Update test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
39 lines
1.5 KiB
YAML
39 lines
1.5 KiB
YAML
- name: cat fastq single-end
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command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_single_end -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config
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tags:
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- cat
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- cat/fastq
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files:
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- path: ./output/cat/test.merged.fastq.gz
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md5sum: f9cf5e375f7de81a406144a2c70cc64d
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- name: cat fastq fastqc_paired_end
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command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config
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tags:
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- cat
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- cat/fastq
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files:
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- path: ./output/cat/test_2.merged.fastq.gz
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md5sum: 77c8e966e130d8c6b6ec9be52fcb2bda
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- path: ./output/cat/test_1.merged.fastq.gz
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md5sum: f9cf5e375f7de81a406144a2c70cc64d
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- name: cat fastq single-end-same-name
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command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_single_end_same_name -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config
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tags:
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- cat
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- cat/fastq
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files:
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- path: ./output/cat/test.merged.fastq.gz
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md5sum: 63f817db7a29a03eb538104495556f66
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- name: cat fastq fastqc_paired_end_same_name
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command: nextflow run ./tests/modules/cat/fastq -entry test_cat_fastq_paired_end_same_name -c ./tests/config/nextflow.config -c ./tests/modules/cat/fastq/nextflow.config
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tags:
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- cat
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- cat/fastq
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files:
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- path: ./output/cat/test_1.merged.fastq.gz
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md5sum: 63f817db7a29a03eb538104495556f66
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- path: ./output/cat/test_2.merged.fastq.gz
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md5sum: fe9f266f43a6fc3dcab690a18419a56e
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