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https://github.com/MillironX/nf-core_modules.git
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f2264c1052
* added scramble/clusteridentifier * linting * added cluster_analysis * added a comment to the mei ref * added reference comments * linting
33 lines
1,013 B
Text
33 lines
1,013 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SCRAMBLE_CLUSTERIDENTIFIER } from '../../../../modules/scramble/clusteridentifier/main.nf'
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workflow test_scramble_clusteridentifier_bam {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['scramble']['bam'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['scramble']['bam_bai'], checkIfExists: true),
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[]
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]
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fasta = []
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SCRAMBLE_CLUSTERIDENTIFIER ( input, fasta )
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}
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workflow test_scramble_clusteridentifier_cram {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['scramble']['cram'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['scramble']['cram_crai'], checkIfExists: true),
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[]
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]
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fasta = file(params.test_data['homo_sapiens']['scramble']['fasta'], checkIfExists: true)
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SCRAMBLE_CLUSTERIDENTIFIER ( input, fasta )
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}
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