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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
34 lines
969 B
YAML
34 lines
969 B
YAML
name: iqtree
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description: Produces a Newick format phylogeny from a multiple sequence alignment using the maxium likelihood algorithm. Capable of bacterial genome size alignments.
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keywords:
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- phylogeny
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- newick
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- maximum likelihood
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tools:
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- iqtree:
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description: Efficient phylogenomic software by maximum likelihood.
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homepage: http://www.iqtree.org
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documentation: http://www.iqtree.org/doc
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tool_dev_url: https://github.com/iqtree/iqtree2
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doi: doi.org/10.1093/molbev/msaa015
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licence: ["GPL v2-or-later"]
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input:
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- alignment:
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type: file
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description: A FASTA format multiple sequence alignment file
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pattern: "*.{fasta,fas,fa,mfa}"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- phylogeny:
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type: file
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description: A phylogeny in Newick format
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pattern: "*.{treefile}"
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authors:
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- "@avantonder"
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- "@aunderwo"
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