mirror of
https://github.com/MillironX/nf-core_modules.git
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aa32a8a72e
* initiated files for calculate contamination * pushing local repo to remote * created script, filled in meta yml, created tests and test yml. local checks passing, needs repo side test data * added option and tests for outputting optional segmentation file * saving for test push * versions updated, test data added * Update main.nf * fixed versions info, should report correctly now * small update to main.nf outputs formatting * Apply suggestions from code review * Update test_data.config * Apply suggestions from code review Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> |
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| .. | ||
| applybqsr | ||
| baserecalibrator | ||
| bedtointervallist | ||
| calculatecontamination | ||
| createsequencedictionary | ||
| fastqtosam | ||
| getpileupsummaries | ||
| haplotypecaller | ||
| intervallisttools | ||
| markduplicates | ||
| mergebamalignment | ||
| mergevcfs | ||
| mutect2 | ||
| revertsam | ||
| samtofastq | ||
| splitncigarreads | ||
| variantfiltration | ||