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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
21 lines
731 B
YAML
21 lines
731 B
YAML
- name: unicycler single-end
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command: nextflow run ./tests/modules/unicycler -entry test_unicycler_single_end -c tests/config/nextflow.config
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tags:
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- unicycler
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files:
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- path: output/unicycler/test.scaffolds.fa
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- path: output/unicycler/test.assembly.gfa
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- path: output/unicycler/test.unicycler.log
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contains:
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- "Assembly complete"
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- name: unicycler paired-end
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command: nextflow run ./tests/modules/unicycler -entry test_unicycler_paired_end -c tests/config/nextflow.config
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tags:
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- unicycler
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files:
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- path: output/unicycler/test.scaffolds.fa
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- path: output/unicycler/test.assembly.gfa
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- path: output/unicycler/test.unicycler.log
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contains:
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- "Assembly complete"
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