nf-core_modules/modules/ensemblvep/Dockerfile
Harshil Patel e937c7950a
Rename software/ directory to modules/ to re-organise module structure (#567)
* Update README

* Rename pytest_software.yml to pytest_modules.yml

* Rename main software directory to modules

* Remove deprecated modules

* Rename tests software to modules

* Replace paths for tests in pytest_modules.yml

* Replace software with modules in Github Actions

* Replace software with modules in main.nf tests

* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00

30 lines
836 B
Docker

FROM nfcore/base:1.14
LABEL \
author="Maxime Garcia" \
description="VEP image for nf-core pipelines" \
maintainer="maxime.garcia@scilifelab.se"
# Install the conda environment
COPY environment.yml /
RUN conda env create -f /environment.yml && conda clean -a
# Add conda installation dir to PATH (instead of doing 'conda activate')
ENV PATH /opt/conda/envs/nf-core-vep-104.3/bin:$PATH
# Setup default ARG variables
ARG GENOME=GRCh38
ARG SPECIES=homo_sapiens
ARG VEP_VERSION=99
# Download Genome
RUN vep_install \
-a c \
-c .vep \
-s ${SPECIES} \
-y ${GENOME} \
--CACHE_VERSION ${VEP_VERSION} \
--CONVERT \
--NO_BIOPERL --NO_HTSLIB --NO_TEST --NO_UPDATE
# Dump the details of the installed packages to a file for posterity
RUN conda env export --name nf-core-vep-104.3 > nf-core-vep-104.3.yml