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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
32 lines
925 B
YAML
32 lines
925 B
YAML
name: fasttree
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description: Produces a Newick format phylogeny from a multiple sequence alignment. Capable of bacterial genome size alignments.
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keywords:
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- phylogeny
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- newick
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tools:
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- fasttree:
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description: FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences
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homepage: http://www.microbesonline.org/fasttree/
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documentation: http://www.microbesonline.org/fasttree/#Usage
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tool_dev_url: None
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doi: ""
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licence: ["GPL v2"]
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input:
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- alignment:
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type: file
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description: A FASTA format multiple sequence alignment file
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pattern: "*.{fasta,fas,fa,mfa}"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- phylogeny:
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type: file
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description: A phylogeny in Newick format
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pattern: "*.{tre}"
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authors:
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- "@aunderwo"
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