mirror of
https://github.com/MillironX/nf-core_modules.git
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86ac223916
* Added cnvpytor/importreaddepth module * Corrected process name in meta.yml file * added -chrom argument * space correction * Added complementary info * fixed typo * md5sum added * modified the module to work on cram files as well * Added cnvpytor/histogram module and test files * Added cnvpytor/partition module and test files * added cnvpytor/callcnvs module and tests * modified by new modules * Added test file and fixed input path in modules * added when block * little fixes * skip tracking test.yml * removed changes to test if conflicts get resolved * updated outfile name * corrected the version.yml content
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
name: cnvpytor_partition
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description: partitioning read depth histograms
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keywords:
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- cnv calling
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- partition histograms
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tools:
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- cnvpytor:
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description: calling CNVs using read depth
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homepage: https://github.com/abyzovlab/CNVpytor
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documentation: https://github.com/abyzovlab/CNVpytor
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tool_dev_url: https://github.com/abyzovlab/CNVpytor
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doi: "10.1101/2021.01.27.428472v1"
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- pytor:
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type: file
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description: pytor file containing read depth data
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pattern: "*.{pytor}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- partitions:
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type: file
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description: pytor file containing partitions of read depth histograms using mean-shift method
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pattern: "*.{pytor}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@sima-r"
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