mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
54 lines
1.4 KiB
YAML
54 lines
1.4 KiB
YAML
name: lofreq_callparallel
|
|
description: It predicts variants using multiple processors
|
|
keywords:
|
|
- call
|
|
- variants
|
|
tools:
|
|
- lofreq:
|
|
description: Lofreq is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It's call-parallel programme predicts variants using multiple processors
|
|
homepage: https://csb5.github.io/lofreq/
|
|
documentation: https://csb5.github.io/lofreq/
|
|
doi: "10.1093/nar/gks918"
|
|
licence: ["MIT"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test' ]
|
|
- bam:
|
|
type: file
|
|
description: Sorted BAM file
|
|
pattern: "*.{bam}"
|
|
- bai:
|
|
type: file
|
|
description: BAM index file
|
|
pattern: "*.{bai}"
|
|
- fasta:
|
|
type: file
|
|
description: Reference genome FASTA file
|
|
pattern: "*.{fasta}"
|
|
- fai:
|
|
type: file
|
|
description: Reference genome FASTA index file
|
|
pattern: "*.{fai}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- vcf:
|
|
type: file
|
|
description: Predicted variants file
|
|
pattern: "*.{vcf}"
|
|
|
|
authors:
|
|
- "@kaurravneet4123"
|
|
- "@bjohnnyd"
|