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* first commit * first commit * update test.yml * update test.yml * Update modules/picard/crosscheckfingerprints/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update modules/picard/crosscheckfingerprints/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * add support for vcf haplotype maps * update test * update test data config, use test data * fix exit code * Update modules/picard/crosscheckfingerprints/main.nf Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> * Update modules/picard/crosscheckfingerprints/main.nf Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> * remove unused stub Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com>
5 lines
205 B
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5 lines
205 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: PICARD_CROSSCHECKFINGERPRINTS {ext.args = "--EXIT_CODE_WHEN_MISMATCH 0"}
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}
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