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https://github.com/MillironX/nf-core_modules.git
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f1c5384c31
* fix: remove left-over unnecessary code * Add prinseq++ * Remove last todo * Fix tests due to variability of output FASTQs (reads can be ordered differently between runs) * Apply suggestions from code review
27 lines
1.2 KiB
YAML
27 lines
1.2 KiB
YAML
- name: prinseqplusplus test_prinseqplusplus_single_end
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command: nextflow run tests/modules/prinseqplusplus -entry test_prinseqplusplus_single_end -c tests/config/nextflow.config
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tags:
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- prinseqplusplus
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files:
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- path: output/prinseqplusplus/test.log
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contains:
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- "reads removed by -lc_entropy"
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- path: output/prinseqplusplus/test_bad_out.fastq.gz
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- path: output/prinseqplusplus/test_good_out.fastq.gz
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- path: output/prinseqplusplus/versions.yml
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- name: prinseqplusplus test_prinseqplusplus_paired_end
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command: nextflow run tests/modules/prinseqplusplus -entry test_prinseqplusplus_paired_end -c tests/config/nextflow.config
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tags:
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- prinseqplusplus
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files:
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- path: output/prinseqplusplus/test.log
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contains:
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- "reads removed by -lc_entropy"
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- path: output/prinseqplusplus/test_bad_out_R1.fastq.gz
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- path: output/prinseqplusplus/test_bad_out_R2.fastq.gz
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- path: output/prinseqplusplus/test_good_out_R1.fastq.gz
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- path: output/prinseqplusplus/test_good_out_R2.fastq.gz
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- path: output/prinseqplusplus/test_single_out_R1.fastq.gz
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- path: output/prinseqplusplus/test_single_out_R2.fastq.gz
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- path: output/prinseqplusplus/versions.yml
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