mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 00:02:04 +00:00
d6850f8312
* new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem * Module samtools/fastq: * output compressed fastq.gz file(s) * add if conditionals for single/paired reads * samtools/fastq: modified test.yml * samtools/fastq: modified main.nf to avoid duplicated part of the script section Co-authored-by: suzannejin <suzanne.jin@crg.eu>
10 lines
391 B
YAML
10 lines
391 B
YAML
- name: samtools fastq test_samtools_fastq
|
|
command: nextflow run tests/software/samtools/fastq -entry test_samtools_fastq -c tests/config/nextflow.config
|
|
tags:
|
|
- samtools
|
|
- samtools_fastq
|
|
files:
|
|
- path: output/samtools/test_2.fastq.gz
|
|
md5sum: 42d3afede8c7ef21577fcd3d07edaa83
|
|
- path: output/samtools/test_1.fastq.gz
|
|
md5sum: 166feed91e5109214b0a7a0d8c53641d
|