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22 lines
616 B
Text
22 lines
616 B
Text
#!/usr/bin/env nextflow
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nextflow.preview.dsl = 2
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include '../../../nf-core/module_testing/check_process_outputs.nf' params(params)
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include '../main.nf' params(params)
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// Define input channels
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readPaths = [
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[ sample: 'SRR4238351',
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R1: '../../../test-datasets/tools/cutadapt/input/SRR396636.sra_1.fastq',
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R2: '../../../test-datasets/tools/cutadapt/input/SRR396636.sra_2.fastq'
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]
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]
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Channel
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.from(readPaths)
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.map { row -> tuple( row.sample_name, file(row.R1.trim()), file(row.R2.trim()) ) }
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.set { ch_read_files }
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// Run the workflow
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workflow {
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cutadapt(ch_read_files)
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// .check_output()
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}
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