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https://github.com/MillironX/nf-core_modules.git
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70daf8be30
This commit provides a minor refactoring with som
Nextflow code style improvments:
- Replaces `.toGiga()` with `.giga`
- Replaces `tag { foo }` with `tag "$foo"`
- Move publishDir before input declarations. Directives should be
before the first input. Tho this is not enforced, it may be in
future versions.
- Replaces input `file` with `path`
- Remove unnecessary parentheses
20 lines
418 B
Text
20 lines
418 B
Text
process shovill {
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tag "$shovill"
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publishDir "${params.outdir}", pattern: '*.fasta', mode: 'copy'
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container "quay.io/biocontainers/shovill:1.0.9--0"
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input:
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tuple val(sample_id), path(forward), path(reverse)
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output:
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path "${sample_id}.fasta"
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script:
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"""
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shovill --R1 ${forward} --R2 ${reverse} --outdir shovill_out
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mv shovill_out/contigs.fa ${sample_id}.fasta
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"""
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}
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