mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
d9e48b70ca
* add software/pairtools * create a branch for pairtools/restrict * fix the different output of conda and docker * remove customized code. * add newline to Frag.bed file. * change the folder of frag.bed. * change \n to \r\n * Remove work.frag.bed Co-authored-by: JoseEspinosa <kadomu@gmail.com>
46 lines
1.1 KiB
YAML
46 lines
1.1 KiB
YAML
name: pairtools_restrict
|
|
description: Assign restriction fragments to pairs
|
|
keywords:
|
|
- sort
|
|
tools:
|
|
- pairtools:
|
|
description: CLI tools to process mapped Hi-C data
|
|
homepage: http://pairtools.readthedocs.io/
|
|
documentation: http://pairtools.readthedocs.io/
|
|
tool_dev_url: https://github.com/mirnylab/pairtools
|
|
doi: ""
|
|
licence: ['MIT']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- pairs:
|
|
type: file
|
|
description: pairs file
|
|
- frag:
|
|
type: file
|
|
description: |
|
|
a tab-separated BED file with the positions of restriction fragments
|
|
(chrom, start, end).
|
|
Can be generated using cooler digest.
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
- restrict:
|
|
type: file
|
|
description: Filtered pairs file
|
|
pattern: "*.{pairs.gz}"
|
|
|
|
authors:
|
|
- "@jianhong"
|