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894349b9b5
* Update test data names. Closes: #459 Thanks: @FriederikeHanssen (`samtools` tests are already fixed by another commit) * Fix file names in tests. The update of test data name required changes in the test yml files. I also updated the `bismark/summary/main.nf` file to get its data from the `params.test_data` map.
10 lines
472 B
YAML
10 lines
472 B
YAML
- name: Run bismark deduplicate test workflow
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command: nextflow run ./tests/software/bismark/deduplicate -entry test_bismark_deduplicate -c tests/config/nextflow.config
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tags:
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- bismark
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- bismark/deduplicate
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files:
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- path: output/bismark/test.paired_end.methylated.deduplicated.bam
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md5sum: 82213a207048bcb5d8cc1cee92703a29
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- path: output/bismark/test.paired_end.methylated.deduplication_report.txt
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md5sum: 86aaf87bac9ccdc3cc83628f20b902dc
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