millironx/nf-core_modules
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nf-core_modules/modules/gatk4
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Ramprasad Neethiraj fd5f6f5f4f
Revert recent changes made to some of the modules (#1463) 
* revert changes to modules

* fix tests

* fix kraken2

* fix untar

* fix cat

* add blank lines

* fix typo
2022-03-30 20:21:06 +02:00
..
applybqsr Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
applyvqsr Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
baserecalibrator Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
bedtointervallist add stub to modules used in raredisease pipeline (#1206) 2022-03-28 17:48:39 +02:00
calculatecontamination Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
combinegvcfs Prettier (#1405) 2022-03-18 14:27:50 +01:00
createsequencedictionary Revert recent changes made to some of the modules (#1463) 2022-03-30 20:21:06 +02:00
createsomaticpanelofnormals Update versions (#1292) 2022-02-15 11:29:36 +01:00
estimatelibrarycomplexity Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
fastqtosam Prettier (#1405) 2022-03-18 14:27:50 +01:00
filtermutectcalls Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
gatherbqsrreports Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
gatherpileupsummaries Prettier (#1405) 2022-03-18 14:27:50 +01:00
genomicsdbimport Update versions (#1292) 2022-02-15 11:29:36 +01:00
genotypegvcfs update priority (#1334) 2022-02-22 14:25:36 +01:00
getpileupsummaries Prettier (#1405) 2022-03-18 14:27:50 +01:00
haplotypecaller Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
indexfeaturefile Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
intervallisttobed intervallisttobed (#1312) 2022-02-17 16:32:26 +01:00
intervallisttools add stub to modules used in raredisease pipeline (#1206) 2022-03-28 17:48:39 +02:00
learnreadorientationmodel Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
markduplicates Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
mergebamalignment Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
mergemutectstats add mergemutectstats (#1314) 2022-02-18 09:38:55 +01:00
mergevcfs Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
mutect2 Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
revertsam Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
samtofastq Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
selectvariants Gatk4 selectvariants (#1346) 2022-02-24 09:51:48 +01:00
splitncigarreads Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
variantfiltration Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
variantrecalibrator Prettier (#1405) 2022-03-18 14:27:50 +01:00