nf-core_modules/tests/software/gatk4/mergebamalignment/test.yml at 8a2a9f7e811abd133424cb3df45418b3572c3ec3 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-13 13:23:09 +00:00

Kevin Menden a90332906b

add mergebamalignment (#259 )

* add mergebamalignment

* fix test.yml

* update to latest gatk4 version

* Update software/gatk4/mergebamalignment/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Update tests/data/README.md

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Update software/gatk4/mergebamalignment/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Update software/gatk4/mergebamalignment/meta.yml

* fixed unmapped/unaligned

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2021-03-17 15:56:56 +01:00

8 lines

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YAML

Raw Blame History

 - name: gatk4 mergebamalignment
   command: nextflow run ./tests/software/gatk4/mergebamalignment -entry test_gatk4_mergebamalignment -c tests/config/nextflow.config
   tags:
     - gatk4
     - gatk4_mergebamalignment
   files:
     - path: output/gatk4/test.merged.bam
       md5sum: 825816a6b288d644318c46cc9968e129