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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
32 lines
837 B
YAML
32 lines
837 B
YAML
name: bwameth_index
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description: Performs indexing of c2t converted reference genome
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keywords:
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- bwameth
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- 3-letter genome
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- index
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- methylseq
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- bisulphite
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- fasta
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tools:
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- bwameth:
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description: |
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Fast and accurate alignment of BS-Seq reads
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using bwa-mem and a 3-letter genome.
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homepage: https://github.com/brentp/bwa-meth
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documentation: https://github.com/brentp/bwa-meth
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arxiv: arXiv:1401.1129
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input:
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- fasta:
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type: file
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description: Input genome fasta file
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output:
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- index:
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type: dir
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description: Directory containing bwameth genome index
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pattern: "index"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@phue"
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