mirror of
https://github.com/MillironX/nf-core_modules.git
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682f789f93
* Bump tool versions for modules required in viralrecon * Fix all the tests * Fix Prettier lint * Remove empty md5sums
62 lines
3 KiB
YAML
62 lines
3 KiB
YAML
- name: nextclade run test_nextclade_run
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command: nextflow run ./tests/modules/nextclade/run -entry test_nextclade_run -c ./tests/config/nextflow.config -c ./tests/modules/nextclade/run/nextflow.config
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tags:
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- nextclade/run
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- nextclade
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files:
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- path: output/nextclade/sars-cov-2/genemap.gff
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md5sum: 21ebebfd0f416eeb959e55ebffd808e8
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- path: output/nextclade/sars-cov-2/primers.csv
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md5sum: 5990c3483bf66ce607aeb90a44e7ef2e
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- path: output/nextclade/sars-cov-2/qc.json
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md5sum: c512f51fda0212b21ffff05779180963
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- path: output/nextclade/sars-cov-2/reference.fasta
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md5sum: c7ce05f28e4ec0322c96f24e064ef55c
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- path: output/nextclade/sars-cov-2/sequences.fasta
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md5sum: 41129d255b99e0e92bdf20e866b99a1b
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- path: output/nextclade/sars-cov-2/tag.json
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md5sum: 402ac2b87e2a6a64a3fbf5ad16497af3
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- path: output/nextclade/sars-cov-2/tree.json
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md5sum: b8f32f547ff9e2131d6fc66b68fc54b1
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- path: output/nextclade/sars-cov-2/virus_properties.json
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md5sum: 5f2de3949e07cb633f3d9e4a7654dc81
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- path: output/nextclade/test.aligned.fasta
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md5sum: 1bf54662837b0df37f1857c7fa631225
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- path: output/nextclade/test.auspice.json
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md5sum: 04d8c32f141435ca45bf430dcb59bcba
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- path: output/nextclade/test.csv
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md5sum: 9489bab7f58c07c0b6949182789aa435
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- path: output/nextclade/test.errors.csv
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md5sum: 810d1c72e1ed010a9a017afba7ce8063
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- path: output/nextclade/test.insertions.csv
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md5sum: c3aa7071d06122ec07ba7c7c4ba6e84a
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- path: output/nextclade/test.json
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contains: ["nextcladeAlgoVersion"]
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- path: output/nextclade/test.ndjson
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md5sum: 32e3c1e733be19509faa0a45260a3d96
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- path: output/nextclade/test.tsv
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md5sum: 7f4bea521bcef4d1bca02c51d11b2fe1
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- path: output/nextclade/test_gene_E.translation.fasta
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md5sum: 1a6d93bd7abfeb193476a86950f07202
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- path: output/nextclade/test_gene_M.translation.fasta
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md5sum: 6f79ab0742c078fcd9d2a474518c7022
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- path: output/nextclade/test_gene_N.translation.fasta
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md5sum: bef9912f101777bfff36225d7e5c3c1f
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- path: output/nextclade/test_gene_ORF1a.translation.fasta
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md5sum: 4dc0e2eb1f2a61939ba49500ee3fa41a
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- path: output/nextclade/test_gene_ORF1b.translation.fasta
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md5sum: 9c2e83d26161b5c887ff51cd64bd15bb
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- path: output/nextclade/test_gene_ORF3a.translation.fasta
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md5sum: adcbede4ebc2cac7af755a9d29d28ea3
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- path: output/nextclade/test_gene_ORF6.translation.fasta
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md5sum: 3785b34cce978c95256f83db6ee82af0
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- path: output/nextclade/test_gene_ORF7a.translation.fasta
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md5sum: 6ede1acb9e75afc84aa30bbc40551d37
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- path: output/nextclade/test_gene_ORF7b.translation.fasta
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md5sum: 460e4cbc5f8c632c2bc9a8aedad5cf43
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- path: output/nextclade/test_gene_ORF8.translation.fasta
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md5sum: c733c88e61b29542664368fbf6dd4c76
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- path: output/nextclade/test_gene_ORF9b.translation.fasta
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md5sum: 0aa13afc6cbf445fc92caa2e6c0a7548
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- path: output/nextclade/test_gene_S.translation.fasta
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md5sum: 77740927a3f00b7e5bfac392fa6d264c
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