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2456ef7d99
* Add eido/validate module * Apply first batch of updates after code review * Remove readlink, update sed, update paths * Move sample table index parameter to config * Update tests/modules/eido/validate/test.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update tests/modules/eido/validate/test.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update tests/modules/eido/validate/test.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update tests/modules/eido/validate/test.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/eido/validate/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
38 lines
948 B
YAML
38 lines
948 B
YAML
name: "eido_validate"
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description: Validate samplesheet or PEP config against a schema
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keywords:
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- eido
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- validate
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- schema
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- format
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- pep
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tools:
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- "validate":
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description: "Validate samplesheet or PEP config against a schema."
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homepage: "http://eido.databio.org/en/latest/"
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documentation: "http://eido.databio.org/en/latest/"
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doi: "10.1093/gigascience/giab077"
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licence: "BSD-2-Clause"
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input:
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- samplesheet:
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type: file
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description: Samplesheet or PEP file to be validated
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pattern: "*.{yaml,yml,csv}"
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- schema:
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type: file
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description: Schema that the samplesheet will be validated against
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pattern: "*.{yaml,yml}"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- log:
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type: file
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description: File containing validation log.
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pattern: "*.log"
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authors:
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- "@rafalstepien"
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