mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 22:23:09 +00:00
57b43ed3de
* Update meta.yml by fixing html pattern expected Fixed html pattern typo: Before: pattern: "*.thml" After fix: pattern: "*.html" * main.nf for bbmap_clumpify * meta.yml for bbmap_clumpify * bbmap/clumpify via Gitpod and @mahesh-panchal guide * small changes to tests * explicit mention of output file pattern - *.clumped.fastq.gz * Update modules/bbmap/clumpify/main.nf Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> * Update modules/bbmap/clumpify/main.nf Accepted @mahesh-panchal suggestions Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
18 lines
796 B
YAML
18 lines
796 B
YAML
- name: bbmap clumpify test_bbmap_clumpify_single_end
|
|
command: nextflow run ./tests/modules/bbmap/clumpify -entry test_bbmap_clumpify_single_end -c ./tests/config/nextflow.config -c ./tests/modules/bbmap/clumpify/nextflow.config
|
|
tags:
|
|
- bbmap/clumpify
|
|
- bbmap
|
|
files:
|
|
- path: output/bbmap/test.clumped.fastq.gz
|
|
- path: output/bbmap/test.clumpify.log
|
|
|
|
- name: bbmap clumpify test_bbmap_clumpify_paired_end
|
|
command: nextflow run ./tests/modules/bbmap/clumpify -entry test_bbmap_clumpify_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/bbmap/clumpify/nextflow.config
|
|
tags:
|
|
- bbmap/clumpify
|
|
- bbmap
|
|
files:
|
|
- path: output/bbmap/test.clumpify.log
|
|
- path: output/bbmap/test_1.clumped.fastq.gz
|
|
- path: output/bbmap/test_2.clumped.fastq.gz
|