mirror of
https://github.com/MillironX/nf-core_modules.git
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daab0a77dd
* Update main.nf * Update meta.yml * Re-add logos as not staged in a way that works with MultiQC config files * Update main.nf * Remove now unnecessary input channel * Remove unused channel from tests * Update hAMRonization to 1.1.1 and add hAMRonization farGene * Fix hamronizatio ntests * Prettier * Fix fargene linting * Correct file * Fix fargene output * Apply suggestions from code review Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * Fix summarise tests * Prettier Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
13 lines
630 B
YAML
13 lines
630 B
YAML
- name: fargene
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command: nextflow run ./tests/modules/fargene -entry test_fargene -c ./tests/config/nextflow.config -c ./tests/modules/fargene/nextflow.config
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tags:
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- fargene
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files:
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- path: output/fargene/fargene_analysis.log
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- path: output/fargene/test/hmmsearchresults/test1.contigs-class_A-hmmsearched.out
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- path: output/fargene/test/results_summary.txt
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md5sum: 690d351cfc52577263ef4cfab1c81f50
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- path: output/fargene/test/tmpdir/test1.contigs-positives.out
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- path: output/fargene/test/tmpdir/tmp.out
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- path: output/gunzip/test1.contigs.fa
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md5sum: 80c4d78f2810f6d9e90fa6da9bb9c4f9
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