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f0a86eaf5b
* Multithreaded samtools commands * Updated the checksums since the BAM files include the actual command line Co-authored-by: Simon Pearce <24893913+SPPearce@users.noreply.github.com>
32 lines
1.5 KiB
YAML
32 lines
1.5 KiB
YAML
- name: samtools ampliconclip no stats no rejects
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command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_no_stats_no_rejects -c ./tests/config/nextflow.config -c ./tests/modules/samtools/ampliconclip/nextflow.config
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tags:
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- samtools
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- samtools/ampliconclip
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files:
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- path: output/samtools/test.bam
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md5sum: 69e4ba713447864231f6cbbaf036c51d
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- name: samtools ampliconclip no stats with rejects
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command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_no_stats_with_rejects -c ./tests/config/nextflow.config -c ./tests/modules/samtools/ampliconclip/nextflow.config
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tags:
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- samtools
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- samtools/ampliconclip
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files:
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- path: output/samtools/test.bam
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md5sum: dd2ed9d7cc4ddc070ece2dccc577f94b
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- path: output/samtools/test.cliprejects.bam
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md5sum: 7d641f6da838f41d75eaabbd897f60bd
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- name: samtools ampliconclip with stats with rejects
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command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_with_stats_with_rejects -c ./tests/config/nextflow.config -c ./tests/modules/samtools/ampliconclip/nextflow.config
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tags:
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- samtools
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- samtools/ampliconclip
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files:
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- path: output/samtools/test.bam
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md5sum: 6c19afc0873fba2f4e530eabf61c0735
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- path: output/samtools/test.cliprejects.bam
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md5sum: 1dfb61aa80d8e90add324ed61ed17061
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- path: output/samtools/test.clipstats.txt
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md5sum: 05ead360a98fab6a678056e326c4f1f3
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