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83b05a8dc0
* add qname feature to samtools_view * update tests * Update modules/samtools/view/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/samtools/view/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * added filter tests Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
56 lines
2.2 KiB
YAML
56 lines
2.2 KiB
YAML
- name: samtools view test_samtools_view
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command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view -c ./tests/config/nextflow.config -c ./tests/modules/samtools/view/nextflow.config
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tags:
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- samtools/view
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- samtools
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files:
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- path: output/samtools/test.bam
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md5sum: e6a9285be7b1c616dc4e17679fce5f1e
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- name: samtools view test_samtools_view_cram
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command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view_cram -c ./tests/config/nextflow.config -c ./tests/modules/samtools/view/nextflow.config
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tags:
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- samtools/view
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- samtools
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files:
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- path: output/samtools/test.cram
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- name: samtools view test_samtools_view_convert
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command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view_convert -c ./tests/config/nextflow.config -c ./tests/modules/samtools/view/nextflow.config
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tags:
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- samtools/view
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- samtools
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files:
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- path: output/samtools/test.bam
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md5sum: 4f4a97da17db79c78b1912da3cdc1d8f
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- name: samtools view test_samtools_view_index
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command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view_index -c ./tests/config/nextflow.config -c ./tests/modules/samtools/view/nextflow.config
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tags:
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- samtools/view
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- samtools
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files:
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- path: output/samtools/test.bam
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md5sum: b2d2482cea94adfc9628473792b0d215
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- path: output/samtools/test.bam.csi
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md5sum: 343a2085b436cab2123147dafd255607
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- name: samtools view test_samtools_view_filter
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command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view_filter -c ./tests/config/nextflow.config -c ./tests/modules/samtools/view/nextflow.config
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tags:
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- samtools/view
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- samtools
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files:
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- path: output/samtools/test.bam
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md5sum: d8e20876423cb1123a559e4347115249
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- path: output/samtools/test.bam.csi
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md5sum: b1d688576e59529271333aa50b3ad3ae
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- name: samtools view test_samtools_view_stubs
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command: nextflow run ./tests/modules/samtools/view -entry test_samtools_view_stubs -c ./tests/config/nextflow.config -c ./tests/modules/samtools/view/nextflow.config
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tags:
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- samtools/view
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- samtools
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files:
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- path: output/samtools/test.bam
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md5sum: e6a9285be7b1c616dc4e17679fce5f1e
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