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07e2868920
* When the `-i` option of bgzip is given, an index is created and needs to be considered an output * It is not necessary to use a subfolder * Updated meta.yml too * Also check that an index name hasn't been requested Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
30 lines
892 B
Text
30 lines
892 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { TABIX_BGZIP } from '../../../../modules/tabix/bgzip/main.nf'
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include { TABIX_BGZIP as TABIX_BGZIP_WITH_GZI } from '../../../../modules/tabix/bgzip/main.nf'
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workflow test_tabix_bgzip_compress {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true) ]
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]
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TABIX_BGZIP ( input )
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}
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workflow test_tabix_bgzip_compress_gzi {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true) ]
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]
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TABIX_BGZIP_WITH_GZI ( input )
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}
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workflow test_tabix_bgzip_decompress {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['sarscov2']['genome']['test_bed_gz'], checkIfExists: true) ]
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]
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TABIX_BGZIP ( input )
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}
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