nf-core_modules/tests/modules/vardictjava/test.yml at 8c1b2a34f2639ece2b15655af66b93dd8453aa75 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-15 14:13:09 +00:00

nvnieuwk eab173f2bb

Added java options to vardict java (#1695 )

* Added java options to vardict java

* updated test.yml

* correctly added java options

* Added automatic version numbers for vardictjava

* possible fix for version number in conda

* removed the cram tests

* linting

* Update modules/vardictjava/main.nf

Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>

* Update modules/vardictjava/main.nf

Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>

* removed the version line

Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>

2022-08-10 14:13:03 +02:00

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 - name: vardictjava test_vardictjava_bam
   command: nextflow run ./tests/modules/vardictjava -entry test_vardictjava_bam -c ./tests/config/nextflow.config -c ./tests/modules/vardictjava/nextflow.config
   tags:
     - vardictjava
   files:
     - path: output/vardictjava/test.vcf.gz
       md5sum: 3f1f227afc532bddeb58f16fd3013fc8