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https://github.com/MillironX/nf-core_modules.git
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c5235a983d
* Add blacklist of modules that shouldn't be updated to .nf-core.yml * nf-core modules bump-versions for all modules * Remove TODO statements identified by linting * Fix md5sums for failing tests * Fix more tests
23 lines
1.1 KiB
YAML
23 lines
1.1 KiB
YAML
- name: gubbins
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command: nextflow run ./tests/modules/gubbins -entry test_gubbins -c tests/config/nextflow.config
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tags:
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- gubbins
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files:
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- path: output/gubbins/all_sites.filtered_polymorphic_sites.fasta
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md5sum: 4cbfd93868d8ed7d4d8b099eba137134
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- path: output/gubbins/all_sites.recombination_predictions.embl
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: output/gubbins/all_sites.recombination_predictions.gff
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md5sum: f95871e79968340cb82532e2c9b0c92b
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- path: output/gubbins/all_sites.branch_base_reconstruction.embl
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md5sum: 9e051646d630f528fff58f1f73286006
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- path: output/gubbins/all_sites.summary_of_snp_distribution.vcf
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md5sum: 276e62e888ea811577c8ffb2da0b3aff
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- path: output/gubbins/all_sites.per_branch_statistics.csv
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md5sum: 25e4fdb6681c3709a9add1d5632bbf3e
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- path: output/gubbins/all_sites.filtered_polymorphic_sites.phylip
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md5sum: 0a77f397a7797c5c3386832745b0c97a
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- path: output/gubbins/all_sites.final_tree.tre
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md5sum: 6cb251b58307aab11cb4b48792d6cda1
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- path: output/gubbins/all_sites.node_labelled.final_tree.tre
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md5sum: e01f965a15924b4f97603b8011c8d3f7
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