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073bbf1b26
* add staphopia-sccmec module * add additional test * change output name * Update main.nf * Update test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
22 lines
709 B
Text
22 lines
709 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { STAPHOPIASCCMEC } from '../../../modules/staphopiasccmec/main.nf' addParams( options: [:] )
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include { STAPHOPIASCCMEC as STAPHOPIASCCMEC_HAMMING } from '../../../modules/staphopiasccmec/main.nf' addParams( options: [args: '--hamming'] )
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workflow test_staphopiasccmec {
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input = [ [ id:'test' ],
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
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STAPHOPIASCCMEC ( input )
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}
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workflow test_staphopiasccmec_hamming {
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input = [ [ id:'test' ],
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
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STAPHOPIASCCMEC_HAMMING ( input )
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}
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