mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
20 lines
808 B
YAML
20 lines
808 B
YAML
- name: strelka germline
|
|
command: nextflow run ./tests/modules/strelka/germline -entry test_strelka_germline -c tests/config/nextflow.config
|
|
tags:
|
|
- strelka
|
|
- strelka/germline
|
|
files:
|
|
- path: output/strelka/test.variants.vcf.gz
|
|
- path: output/strelka/test.variants.vcf.gz.tbi
|
|
- path: output/strelka/test.genome.vcf.gz
|
|
- path: output/strelka/test.genome.vcf.gz.tbi
|
|
- name: strelka germline target bed
|
|
command: nextflow run ./tests/modules/strelka/germline -entry test_strelka_germline_target_bed -c tests/config/nextflow.config
|
|
tags:
|
|
- strelka
|
|
- strelka/germline
|
|
files:
|
|
- path: output/strelka/test.variants.vcf.gz
|
|
- path: output/strelka/test.variants.vcf.gz.tbi
|
|
- path: output/strelka/test.genome.vcf.gz
|
|
- path: output/strelka/test.genome.vcf.gz.tbi
|