mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 19:48:16 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
43 lines
1.3 KiB
YAML
43 lines
1.3 KiB
YAML
name: bedtools_makewindows
|
|
|
|
description: Makes adjacent or sliding windows across a genome or BED file.
|
|
keywords:
|
|
- bed
|
|
- windows
|
|
tools:
|
|
- bedtools:
|
|
description: A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
|
|
homepage: https://bedtools.readthedocs.io
|
|
documentation: https://bedtools.readthedocs.io/en/latest/content/tools/makewindows.html
|
|
tool_dev_url: None
|
|
doi: "10.1093/bioinformatics/btq033"
|
|
licence: ["MIT"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- regions:
|
|
type: file
|
|
description: BED file OR Genome details file (<chromName><TAB><chromSize>)
|
|
pattern: "*.{bed,fai,tab}"
|
|
- use_bed:
|
|
type: boolean
|
|
description: true = input is a BED file; false = input is a genome details file
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- tab:
|
|
type: file
|
|
description: Windows TAB file (BED or BED-like format)
|
|
pattern: "*.tab"
|
|
authors:
|
|
- "@kevbrick"
|