mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
42 lines
945 B
YAML
42 lines
945 B
YAML
name: mlst
|
|
description: Run Torsten Seemann's classic MLST on a genome assembly
|
|
keywords:
|
|
- mlst
|
|
tools:
|
|
- mlst:
|
|
description: Scan contig files against PubMLST typing schemes
|
|
homepage: None
|
|
documentation: None
|
|
tool_dev_url: None
|
|
doi: ""
|
|
licence: ["GPL v2"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: Assembly fasta file
|
|
pattern: "*.{fasta,fa,fna}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- tsv:
|
|
type: file
|
|
description: MLST calls in tsv format
|
|
pattern: "*.{tsv}"
|
|
|
|
authors:
|
|
- "@lskatz"
|
|
- "@tseemann"
|