mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
16 lines
504 B
Text
16 lines
504 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { SAMTOOLS_DEPTH } from '../../../modules/samtools/depth/main.nf'
|
|
include { SEXDETERRMINE } from '../../../modules/sexdeterrmine/main.nf'
|
|
|
|
workflow test_sexdeterrmine {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['homo_sapiens']['illumina']['test3_single_end_markduplicates_sorted_bam'], checkIfExists: true) ]
|
|
|
|
SAMTOOLS_DEPTH ( input )
|
|
SEXDETERRMINE ( SAMTOOLS_DEPTH.out.tsv, [] )
|
|
}
|