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16 lines
504 B
Text
16 lines
504 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SAMTOOLS_DEPTH } from '../../../modules/samtools/depth/main.nf'
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include { SEXDETERRMINE } from '../../../modules/sexdeterrmine/main.nf'
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workflow test_sexdeterrmine {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test3_single_end_markduplicates_sorted_bam'], checkIfExists: true) ]
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SAMTOOLS_DEPTH ( input )
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SEXDETERRMINE ( SAMTOOLS_DEPTH.out.tsv, [] )
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}
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