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598ca152ec
* added intervallisttools module * add intervallisttools module * arguments are now supplied using options.args * removed java heapsize settings * changes in main.nf and it is tested * comment added * Update software/gatk4/intervallisttools/meta.yml Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> * Update tests/software/gatk4/intervallisttools/test.yml Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> * review comment on tags in bedtointerval * modified the test to get input from bedtointerval module * Update software/gatk4/intervallisttools/meta.yml * Apply suggestions from code review Co-authored-by: Kevin Menden <kevin.menden@live.com> * Apply suggestions from code review * Update tests/config/pytest_software.yml Co-authored-by: Kevin Menden <kevin.menden@live.com> * Apply suggestions from code review * Apply suggestions from code review Co-authored-by: @praveenraj2018 <praveen.raj.somarajan@ki.se> Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> Co-authored-by: Kevin Menden <kevin.menden@live.com> |
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| .. | ||
| applybqsr | ||
| baserecalibrator | ||
| bedtointervallist | ||
| createsequencedictionary | ||
| fastqtosam | ||
| haplotypecaller | ||
| intervallisttools | ||
| markduplicates | ||
| mergebamalignment | ||
| mergevcfs | ||
| revertsam | ||
| samtofastq | ||
| splitncigarreads | ||
| variantfiltration | ||