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7bfbce94b0
* Added fq/lint module Additions: - fq/lint module, which checks paired end FASTQ files and confirms they are valid. Relates to #1967 * fq/lint linting * Correct Singularity image Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
32 lines
787 B
YAML
32 lines
787 B
YAML
name: "fq_lint"
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description: write your description here
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keywords:
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- sort
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tools:
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- "fq":
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description: "fq is a library to generate and validate FASTQ file pairs."
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homepage: "https://github.com/stjude-rust-labs/fq"
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documentation: "https://github.com/stjude-rust-labs/fq"
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tool_dev_url: "https://github.com/stjude-rust-labs/fq"
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doi: ""
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licence: "['MIT']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fastq:
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type: file
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description: FASTQ file list
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pattern: "*.fastq{,.gz}"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@adamrtalbot"
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