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https://github.com/MillironX/nf-core_modules.git
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a066456735
* NGSCheckMate v1 * Add some tests for UMItools * Added tests for dedup * Include pytest * Delete main.nf * Delete meta.yml * Delete main.nf * Delete nextflow.config * Delete test.yml * add prettier * Add direct test on bam * Update tests/modules/umitools/dedup/main.nf Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com> * Update tests/modules/umitools/dedup/main.nf Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com> * Update tests/config/pytest_modules.yml Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com> * Not ignore-umi Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> Co-authored-by: Edmund Miller <edmund.a.miller@gmail.com>
54 lines
2.1 KiB
YAML
54 lines
2.1 KiB
YAML
- name: umitools dedup test_umitools_dedup_no_umi
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command: nextflow run tests/modules/umitools/dedup -entry test_umitools_dedup_no_umi -c tests/config/nextflow.config
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tags:
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- umitools/dedup
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- umitools
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files:
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- path: output/umitools/dedup.bam
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md5sum: 53b4edc399db81b87d2343e78af73cf0
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- path: output/umitools/dedup_edit_distance.tsv
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md5sum: 65186b0964e2f8d970cc04d736d8b119
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- path: output/umitools/dedup_per_umi.tsv
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md5sum: 8e6783a4a79437b095f095f2aefe7c01
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- path: output/umitools/dedup_per_umi_per_position.tsv
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md5sum: 9386db4a104b8e4e32f3ca4a84efa4ac
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- path: output/umitools/versions.yml
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md5sum: 4aaaa33565bcd9a984255139933d6446
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- name: umitools dedup test_umitools_dedup_single_end
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command: nextflow run tests/modules/umitools/dedup -entry test_umitools_dedup_single_end -c tests/config/nextflow.config
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tags:
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- umitools
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- umitools/dedup
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files:
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- path: output/bwa/test.bam
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md5sum: ea41a3cdca1856b22845e1067fd31f37
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- path: output/bwa/versions.yml
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md5sum: ce4d987f2c53f4c01b31d210c357b24a
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- path: output/samtools/test.bam.bai
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md5sum: 095af0ad3921212597ffd7c342ecd5a0
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- path: output/samtools/versions.yml
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md5sum: 69b7cde627c9b4e8403dfc125db71cc7
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- path: output/umitools/dedup.bam
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md5sum: d95df177063432748ff33f473910cb1e
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- path: output/umitools/versions.yml
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md5sum: 730e768dd199d2f5bfb6fd0850446344
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- name: umitools dedup test_umitools_dedup_paired_end
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command: nextflow run tests/modules/umitools/dedup -entry test_umitools_dedup_paired_end -c tests/config/nextflow.config
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tags:
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- umitools
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- umitools/dedup
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files:
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- path: output/bwa/test.bam
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md5sum: 1ad786cae0ff2254c655e3a206929617
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- path: output/bwa/versions.yml
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md5sum: b524c5ddf61c20f4a0a93ae8fc78b851
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- path: output/samtools/test.bam.bai
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md5sum: 7496f4056a8e86327ca93e350f282fc2
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- path: output/samtools/versions.yml
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md5sum: 72fc2ab934fd4bca0f7f14a705530d34
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- path: output/umitools/dedup.bam
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md5sum: e8d1eae2aacef76254948c5568e94555
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- path: output/umitools/versions.yml
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md5sum: fd39e05042d354b3d8de49b617d3183d
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