mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
967fb22ded
* Update versions * update checksums + remove variables as input for applyvqsr * sneak in removal of values and provide them via modules.config * update another checksum * more checksums * move vairable to config * remove controlfreec, wrong branch * add line break
32 lines
1.3 KiB
YAML
32 lines
1.3 KiB
YAML
- name: gatk4 applybqsr test_gatk4_applybqsr
|
|
command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/applybqsr
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
md5sum: d088422be886dc8507ff97fcc7dd968a
|
|
- path: output/gatk4/versions.yml
|
|
md5sum: d5c6455d8a77aecc63f87c795fc3443e
|
|
|
|
- name: gatk4 applybqsr test_gatk4_applybqsr_intervals
|
|
command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_intervals -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/applybqsr
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
md5sum: 4bfa18d651abd945e240b05e70107716
|
|
- path: output/gatk4/versions.yml
|
|
md5sum: cb4cb8a62e117b4adc643ae47883d53c
|
|
|
|
- name: gatk4 applybqsr test_gatk4_applybqsr_cram
|
|
command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_cram -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/applybqsr
|
|
files:
|
|
- path: output/gatk4/test.cram
|
|
md5sum: 2e0bca197af4f043a4a85152e6edbe04
|
|
- path: output/gatk4/versions.yml
|
|
md5sum: 1efaa18be943bab4e4c54191d6eaa260
|