mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
bf5edb8614
* add module for mash dist * fix lint Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
16 lines
453 B
Text
16 lines
453 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { MASH_DIST } from '../../../../modules/mash/dist/main.nf'
|
|
|
|
workflow test_mash_dist {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true)
|
|
]
|
|
|
|
reference = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
MASH_DIST ( input, reference )
|
|
}
|