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28 lines
857 B
Bash
Executable file
28 lines
857 B
Bash
Executable file
#!/usr/bin/env bash
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set -euo pipefail
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# Build and push all containers
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build_push() {
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GENOME=$1
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SPECIES=$2
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VEP_CACHE_VERSION=$3
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VEP_VERSION=$4
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docker build \
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. \
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-t nfcore/vep:${VEP_VERSION}.${GENOME} \
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--build-arg GENOME=${GENOME} \
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--build-arg SPECIES=${SPECIES} \
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--build-arg VEP_CACHE_VERSION=${VEP_CACHE_VERSION} \
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--build-arg VEP_VERSION=${VEP_VERSION}
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docker push nfcore/vep:${VEP_VERSION}.${GENOME}
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}
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build_push "GRCh37" "homo_sapiens" "106" "106.1"
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build_push "GRCh38" "homo_sapiens" "106" "106.1"
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build_push "GRCm38" "mus_musculus" "102" "106.1"
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build_push "GRCm39" "mus_musculus" "106" "106.1"
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build_push "CanFam3.1" "canis_lupus_familiaris" "104" "106.1"
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build_push "WBcel235" "caenorhabditis_elegans" "106" "106.1"
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