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16 lines
552 B
Plaintext
16 lines
552 B
Plaintext
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BLAST_TBLASTN } from '../../../../modules/blast/tblastn/main.nf'
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include { BLAST_MAKEBLASTDB } from '../../../../modules/blast/makeblastdb/main.nf'
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workflow test_blast_tblastn {
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input = [ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
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input_pep = [ file(params.test_data['sarscov2']['genome']['proteome_fasta'], checkIfExists: true) ]
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BLAST_MAKEBLASTDB ( input )
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BLAST_TBLASTN ( [ [id:'test'], input_pep ], BLAST_MAKEBLASTDB.out.db )
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}
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