mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
6d88f2da8c
* Rename process from STRINGTIE to STRINGTIE_STRINGTIE * Bump Stringtie version to 2.2.1 and remove empty files in tests * Fix tests for stringtie/merge Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
47 lines
2.2 KiB
YAML
47 lines
2.2 KiB
YAML
- name: stringtie merge forward-strand
|
|
command: nextflow run ./tests/modules/stringtie/merge -entry test_stringtie_forward_merge -c ./tests/config/nextflow.config -c ./tests/modules/stringtie/merge/nextflow.config
|
|
tags:
|
|
- stringtie
|
|
- stringtie/merge
|
|
files:
|
|
- path: output/stringtie/stringtie.merged.gtf
|
|
md5sum: d959eb2fab0db48ded7275e0a2e83c05
|
|
- path: output/stringtie/test.ballgown/e2t.ctab
|
|
md5sum: 9ae42e056c955a88a883e5e917840d77
|
|
- path: output/stringtie/test.ballgown/e_data.ctab
|
|
md5sum: adbedee7b2f84c70362ad6dfa57442b7
|
|
- path: output/stringtie/test.ballgown/i2t.ctab
|
|
md5sum: 658131af118cfb416939044fdb5411de
|
|
- path: output/stringtie/test.ballgown/i_data.ctab
|
|
md5sum: f01d94a7d0dcfad3bfab18ed50dad16c
|
|
- path: output/stringtie/test.ballgown/t_data.ctab
|
|
md5sum: 92a98902784e7406ffe054d2adbabc7c
|
|
- path: output/stringtie/test.coverage.gtf
|
|
- path: output/stringtie/test.gene.abundance.txt
|
|
md5sum: 8bcd8e2730ed3337e2730186dbc184f3
|
|
- path: output/stringtie/test.transcripts.gtf
|
|
md5sum: a914bd55b68a4b5f607738b17861e362
|
|
|
|
- name: stringtie merge test_stringtie_reverse_merge
|
|
command: nextflow run ./tests/modules/stringtie/merge -entry test_stringtie_reverse_merge -c ./tests/config/nextflow.config -c ./tests/modules/stringtie/merge/nextflow.config
|
|
tags:
|
|
- stringtie
|
|
- stringtie/merge
|
|
files:
|
|
- path: output/stringtie/stringtie.merged.gtf
|
|
md5sum: 6da479298d73d5b3216d4e1576a2bdf4
|
|
- path: output/stringtie/test.ballgown/e2t.ctab
|
|
md5sum: 9ae42e056c955a88a883e5e917840d77
|
|
- path: output/stringtie/test.ballgown/e_data.ctab
|
|
md5sum: fd8496d3957ade3b2c0853155f9a67da
|
|
- path: output/stringtie/test.ballgown/i2t.ctab
|
|
md5sum: 658131af118cfb416939044fdb5411de
|
|
- path: output/stringtie/test.ballgown/i_data.ctab
|
|
md5sum: f01d94a7d0dcfad3bfab18ed50dad16c
|
|
- path: output/stringtie/test.ballgown/t_data.ctab
|
|
md5sum: 92a98902784e7406ffe054d2adbabc7c
|
|
- path: output/stringtie/test.coverage.gtf
|
|
- path: output/stringtie/test.gene.abundance.txt
|
|
md5sum: f289f41b3ba1b9f0aa05d14408f1a5da
|
|
- path: output/stringtie/test.transcripts.gtf
|
|
md5sum: 9dcdc9577c0fdbb25089eda210267546
|