mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
54 lines
1.5 KiB
YAML
54 lines
1.5 KiB
YAML
name: arriba
|
|
description: Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data.
|
|
keywords:
|
|
- fusion
|
|
- arriba
|
|
tools:
|
|
- arriba:
|
|
description: Fast and accurate gene fusion detection from RNA-Seq data
|
|
homepage: https://github.com/suhrig/arriba
|
|
documentation: https://arriba.readthedocs.io/en/latest/
|
|
tool_dev_url: https://github.com/suhrig/arriba
|
|
doi: "10.1101/gr.257246.119"
|
|
licence: ['MIT']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: BAM/CRAM/SAM file
|
|
pattern: "*.{bam,cram,sam}"
|
|
- fasta:
|
|
type: file
|
|
description: Assembly FASTA file
|
|
pattern: "*.{fasta}"
|
|
- gtf:
|
|
type: file
|
|
description: Annotation GTF file
|
|
pattern: "*.{gtf}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
- fusions:
|
|
type: file
|
|
description: File contains fusions which pass all of Arriba's filters.
|
|
pattern: "*.{fusions.tsv}"
|
|
- fusions_fail:
|
|
type: file
|
|
description: File contains fusions that Arriba classified as an artifact or that are also observed in healthy tissue.
|
|
pattern: "*.{fusions.discarded.tsv}"
|
|
|
|
authors:
|
|
- "@praveenraj2018"
|