mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 12:43:09 +00:00
906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
name: artic_guppyplex
|
|
description: Aggregates fastq files with demultiplexed reads
|
|
keywords:
|
|
- artic
|
|
- aggregate
|
|
- demultiplexed reads
|
|
tools:
|
|
- artic:
|
|
description: ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore
|
|
homepage: https://artic.readthedocs.io/en/latest/
|
|
documentation: https://artic.readthedocs.io/en/latest/
|
|
tool_dev_url: https://github.com/artic-network/fieldbioinformatics
|
|
doi: ""
|
|
licence: ['MIT']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fastq_dir:
|
|
type: directory
|
|
description: Directory containing the fastq files with demultiplexed reads
|
|
pattern: "*"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fastq:
|
|
type: file
|
|
description: Aggregated FastQ files
|
|
pattern: "*.{fastq.gz}"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
|
|
authors:
|
|
- "@joseespinosa"
|
|
- "@drpatelh"
|