mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
36 lines
1 KiB
YAML
36 lines
1 KiB
YAML
name: bismark_genomepreparation
|
|
description: |
|
|
Converts a specified reference genome into two different bisulfite
|
|
converted versions and indexes them for alignments.
|
|
keywords:
|
|
- bismark
|
|
- 3-letter genome
|
|
- index
|
|
- methylation
|
|
- 5mC
|
|
- methylseq
|
|
- bisulphite
|
|
- fasta
|
|
tools:
|
|
- bismark:
|
|
description: |
|
|
Bismark is a tool to map bisulfite treated sequencing reads
|
|
and perform methylation calling in a quick and easy-to-use fashion.
|
|
homepage: https://github.com/FelixKrueger/Bismark
|
|
documentation: https://github.com/FelixKrueger/Bismark/tree/master/Docs
|
|
doi: 10.1093/bioinformatics/btr167
|
|
input:
|
|
- fasta:
|
|
type: file
|
|
description: Input genome fasta file
|
|
output:
|
|
- index:
|
|
type: dir
|
|
description: Bismark genome index directory
|
|
pattern: "BismarkIndex"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@phue"
|