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906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
41 lines
1 KiB
YAML
41 lines
1 KiB
YAML
name: cooler_dump
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description: Dump a cooler’s data to a text stream.
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keywords:
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- dump
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tools:
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- cooler:
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description: Sparse binary format for genomic interaction matrices
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homepage: https://cooler.readthedocs.io/en/latest/index.html
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documentation: https://cooler.readthedocs.io/en/latest/index.html
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tool_dev_url: https://github.com/open2c/cooler
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doi: "10.1093/bioinformatics/btz540"
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licence: ['BSD-3-clause']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- cool:
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type: file
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description: Path to COOL file
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pattern: "*.{cool,mcool}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "versions.yml"
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- bedpe:
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type: file
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description: Output text file
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pattern: "*.bedpe"
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authors:
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- "@jianhong"
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