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906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
39 lines
1,003 B
YAML
39 lines
1,003 B
YAML
name: last_mafswap
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description: Reorder alignments in a MAF file
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keywords:
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- LAST
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- reorder
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- alignment
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- MAF
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tools:
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- last:
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description: LAST finds & aligns related regions of sequences.
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homepage: https://gitlab.com/mcfrith/last
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documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/
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tool_dev_url: https://gitlab.com/mcfrith/last
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doi: ""
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licence: ['GPL-3.0-or-later']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- maf:
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type: file
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description: Multiple Aligment Format (MAF) file, optionally compressed with gzip
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pattern: "*.{maf.gz,maf}"
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output:
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- maf:
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type: file
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description: Multiple Aligment Format (MAF) file, compressed with gzip
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pattern: "*.{maf.gz}"
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- version:
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type: file
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description: File containing software version
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pattern: "versions.yml"
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authors:
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- "@charles-plessy"
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